#!/bin/bash

set -o errexit
set -o nounset

# ADJUST THIS FOR YOUR SYSTEM
readonly DATABASE_DIR=${ANTISMASH_DATABASE_DIR:-/data/databases}
readonly VERSION="8.0.4"

# handle input file
readonly INPUT_FILE=$(basename $1)
readonly INPUT_DIR=$(dirname $(readlink -f $1))
shift

# handle output file
readonly OUTPUT_DIR=$(readlink -f $1)
shift

# Links within the container
readonly CONTAINER_SRC_DIR=/input
readonly CONTAINER_DST_DIR=/output
readonly CONTAINER_DB_DIR=/databases

if [ ! -d ${OUTPUT_DIR} ]; then
    mkdir ${OUTPUT_DIR}
fi

podman run \
    --volume ${INPUT_DIR}:${CONTAINER_SRC_DIR}:ro \
    --volume ${OUTPUT_DIR}:${CONTAINER_DST_DIR}:rw \
    --volume ${DATABASE_DIR}:${CONTAINER_DB_DIR}:ro \
    --detach=false \
    --rm \
    docker.io/antismash/standalone-lite:${VERSION} \
    ${INPUT_FILE} \
    $@